Phd | Bioinformatician
| Google Scholar | ORCID | Scopus | GitHub |
Associate Professor at Université Paris-Saclay. I am interested in protein structure, interactions and evolution.
Saldaño, T., Escobedo, N., Marchetti, J., Zea, D. J., Mac Donagh, J., Velez Rueda, A. J., Gonik, E., Garcia, A. M., Salas, M., Peters, T. & Demitroff, N. (2022). Impact of protein conformational diversity on AlphaFold2 predictions. Bioinformatics link
Zea, D. J., Laskina, S., Baudin, A., Richard, H., & Laine, E. (2021). Assessing conservation of alternative splicing with evolutionary splicing graphs. Genome Research, gr-274696. link
Palopoli, N., Marchetti, J., Monzon, A. M., Zea, D. J., Tosatto, S. C. E., Fornasari, M. S. & Parisi, G. (2020). Intrinsically Disordered Protein Ensembles Shape Evolutionary Rates Revealing Conformational Patterns. Journal of Molecular Biology link
Teppa, E., Zea, D. J., Oteri, F. & Carbone, A. (2020). COVTree: Coevolution in OVerlapped sequences by Tree analysis server. Nucleic Acids Research, gkaa330 link
Teppa, E., Nadalin, F., Combet, C., Zea, D. J., David, L. & Carbone, A. (2020). Coevolution analysis of amino-acids reveals diversified drug resistance solutions in viral sequences: the case study of Hepatitis B Virus. Virus Evolution, 6(1), veaa006 link
Ait-hamlat, A., Zea, D. J., Labeeuw, A., Polit, L., Richard, H. & Laine, E. (2020). Transcripts’ evolutionary history and structural dynamics give mechanistic insights into the functional diversity of the JNK family. Journal of Molecular Biology link
Ochoa, S., Martínez‐Pérez, E., Zea, D. J., Molina‐Vila, M. A., & Marino‐Buslje, C. (2019). Comutation and exclusion analysis in human tumors: A tool for cancer biology studies and for rational selection of multitargeted therapeutic approaches. Human mutation, 40(4), 413-425. link
Zea, D. J., Monzon, A. M., Parisi, G., & Marino-Buslje, C. (2018). How is structural divergence related to evolutionary information?. Molecular phylogenetics and evolution, 127, 859-866. link
Marino-Buslje, C., Monzon, A. M., Zea, D. J., Fornasari, M. S., & Parisi, G. (2017). On the dynamical incompleteness of the Protein Data Bank. Briefings in Bioinformatics link
Teppa, E., Zea, D. J., & Marino‐Buslje, C. (2017). Protein–protein interactions leave evolutionary footprints: High molecular coevolution at the core of interfaces. Protein Science, 26(12), 2438-2444. link
Monzon, A. M., Zea, D. J., Marino-Buslje, C., & Parisi, G. (2017). Homology modeling in a dynamical world. Protein Science, 26(11), 2195-2206. link
Monzon, A. M., Zea, D. J., Fornasari, M. S., Saldaño, T., Fernandez-Alberti, S., Tosatto, S. C., & Parisi, G. (2017). Conformational diversity analysis reveals three functional mechanisms in proteins. PLOS Computational Biology, 13, no. 2: e1005398. link
Zea, D. J., Anfossi, D., Nielsen, M., & Marino-Buslje, C. (2016). MIToS. jl: mutual information tools for protein sequence analysis in the Julia language. Bioinformatics, btw646. link
Zea, D. J., Monzon, A. M., Gonzalez, C., Fornasari, M. S., Tosatto, S. C., & Parisi, G. (2016). Disorder transitions and conformational diversity cooperatively modulate biological function in proteins. Protein Science, 25(6), 1138-1146. link
Iserte, J., Simonetti, F. L., Zea, D. J., Teppa, E., & Marino-Buslje, C. (2015). I-COMS: interprotein-COrrelated mutations server. Nucleic acids research, 43(W1), W320-W325. link
Parisi, G., Zea, D. J., Monzon, A. M., & Marino-Buslje, C. (2015). Conformational diversity and the emergence of sequence signatures during evolution. Current opinion in structural biology, 32, 58-65. link
Zea, D. J., Monzon, A. M., Fornasari, M. S., Marino-Buslje, C., & Parisi, G. (2013). Protein conformational diversity correlates with evolutionary rate. Molecular biology and evolution, 30(7), 1500-1503. link
Teppa, E., Zea, D. J., & Buslje, C. M. (2012). Identification of Coevolving Amino Acids using Mutual Information. iConcept Press. link
Monzon, A. M., Fornasari, M. S., Zea, D. J., & Parisi, G. (2019). Exploring Protein Conformational Diversity. In Computational Methods in Protein Evolution (pp. 353-365). Humana Press, New York, NY. link